Provide your own database
In order to generate random secondary structures you have to provide
a database of structures used to derive a stochastic model (the structres need to be encoded in bar bracket notation, an example can be found
here
);
the minimal size, maximal size, stepsize and number of the structures to be generated.
Min. Size:
Max. Size:
(at most 500)
Stepsize:
(integer >0)
Number:
(of each size; a maximal total of 1000)
Since the computations to be performed are rather time-consuming they are submitted to a queue; the output (a text file with the generated structures) will eventually be provided for download.