Provide your own database

In order to generate random secondary structures you have to provide

  • a database of structures used to derive a stochastic model (the structres need to be encoded in bar bracket notation, an example can be found here);
  • the minimal size, maximal size, stepsize and number of the structures to be generated.


Min. Size:
Max. Size: (at most 500)
Stepsize: (integer >0)
Number: (of each size; a maximal total of 1000)


Since the computations to be performed are rather time-consuming they are submitted to a queue; the output (a text file with the generated structures) will eventually be provided for download.